aseimel
57 lines
1.6 KiB
Bash
Executable File
57 lines
1.6 KiB
Bash
Executable File
#!/usr/bin/env bash
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set -euo pipefail
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MODE="${1:-reuse}"
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repo_root="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd -P)"
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cd "$repo_root"
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case "$MODE" in
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full|reuse|dry-run) ;;
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*)
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echo "Usage: $0 [full|reuse|dry-run]" >&2
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exit 1
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;;
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esac
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export PARTY2D_RAW_DATA_DIR="${PARTY2D_RAW_DATA_DIR:-$repo_root/_local/raw}"
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export TMPDIR="${TMPDIR:-$repo_root/_local/tmp}"
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mkdir -p "$TMPDIR"
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if [ "$MODE" = "dry-run" ]; then
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echo "Checking commands..."
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command -v bash >/dev/null
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command -v Rscript >/dev/null
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command -v julia >/dev/null
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echo "Checking key files..."
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test -f Project.toml
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test -f Manifest.toml
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test -f models/stan_model_2dim_v6.stan
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test -f data/text_data.csv
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test -f data/expert.csv
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test -f data/lr_data.csv
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test -f data/model_data.csv
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echo "Checking shell syntax..."
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bash -n scripts/01_prepare_data.sh
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bash -n scripts/02_fit_model.sh
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bash -n scripts/03_extract_estimates.sh
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bash -n scripts/04_enrich_estimates.sh
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bash -n scripts/05_validate_estimates.sh
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echo "Checking R syntax..."
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Rscript -e 'files <- list.files("src/r", pattern="\\.R$", full.names=TRUE); invisible(lapply(files, parse))'
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echo "Checking Julia project can instantiate without running model code..."
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julia --project=. -e 'import Pkg; Pkg.instantiate(); println("Julia project OK")'
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echo "Dry run passed. No model fitting was run."
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exit 0
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fi
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bash scripts/01_prepare_data.sh
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if [ "$MODE" = "full" ]; then
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bash scripts/02_fit_model.sh
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else
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echo "reuse: skipping Stan model fitting; using latest existing model output"
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fi
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bash scripts/03_extract_estimates.sh
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bash scripts/04_enrich_estimates.sh
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