Armin
35 lines
1.1 KiB
Bash
35 lines
1.1 KiB
Bash
#!/usr/bin/env bash
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set -euo pipefail
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usage() {
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cat >&2 <<'EOF'
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Usage: bash data-setup/run_data_setup.sh
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EOF
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}
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if [ "$#" -ne 0 ]; then
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usage
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exit 1
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fi
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repo_root="$(cd "$(dirname "${BASH_SOURCE[0]}")/.." && pwd -P)"
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cd "$repo_root"
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export PARTY2D_RAW_DATA_DIR="${PARTY2D_RAW_DATA_DIR:-$repo_root/_local/raw}"
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export PARTY2D_BUILD_DIR="${PARTY2D_BUILD_DIR:-$repo_root/_local/build}"
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export PARTY2D_GENERATED_INPUT_DIR="${PARTY2D_GENERATED_INPUT_DIR:-$repo_root/_local/generated-inputs}"
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export PARTY2D_REPORT_DIR="${PARTY2D_REPORT_DIR:-$repo_root/_local/reports}"
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export R_LIBS_USER="${R_LIBS_USER:-$repo_root/_local/R/library}"
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mkdir -p "$R_LIBS_USER"
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command -v bash >/dev/null
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command -v Rscript >/dev/null
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bash -n data-setup/check_raw_data.sh
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Rscript data-setup/R/00_install_dependencies.R
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Rscript data-setup/R/01_download_sources.R || true
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bash data-setup/check_raw_data.sh
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rm -rf "$PARTY2D_BUILD_DIR" "$PARTY2D_GENERATED_INPUT_DIR"
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mkdir -p "$PARTY2D_BUILD_DIR" "$PARTY2D_GENERATED_INPUT_DIR"
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Rscript data-setup/R/02_build_model_inputs.R
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Rscript data-setup/R/03_compare_generated_inputs.R
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